Primate evolutionary biologist and geneticist at the University of Texas at Austin

As a data scientist, I employ a variety of ecoinformatic tools to understand and improve the sustainability of complex social-ecological systems.  I also apply Science and Technology Studies lenses to my modeling processes in order to see potential ways to make social-ecological system management more just.  I prefer to work collaboratively with communities on modeling: teaching mapping and modeling skills, collaboratively building data representations and models, and analyzing and synthesizing community-held data as appropriate. At the same time, I look for ways to create space for qualitative and other forms of knowledge to reside alongside quantitative analysis, using mixed and integrative methods.

Recent projects include: 1) Studying Californian forest dynamics using Bayesian statistical models and object-based image analysis (datasets included forest inventories and historical aerial photographs); 2) Indigenous mapping and community-based modeling of agro-pastoral systems in rural Zimbabwe (methods included GPS/GIS, agent-based modeling and social network analysis); 3) Supporting Tribal science and environmental management on the Klamath River in California using historical aerial image analysis of land use/land cover change and social networks analysis of water quality management processes; 4) Bayesian statistical modeling of community-collected data on human uses of Marine Protected Areas in California.

I am a marine environmental scientist by training (U Oldenburg, 2001) with a PhD in atmospheric physics (U Wuppertal, 2005) and a strong modeling focus throughout my career.

Archaological modeling

I have built models (C, C++) for understanding the regional transitions from hunting-gathering subsistence to agropastoral life styles throughout the world. The fundamental principle of these models is to consider aggregate traits of populations, such as the preference for a subsistence style. I applied these models to the European “Wave of Advance”, to the disintegration of the urban Indus civilisation and to the differential emergence of agropastoralism in the Americas versus Europe, but also globally. An interesting outcome of these models are global and reginoally resolved prehistoric CO2 emissions caused by the land use transitions.

Ecosystem modeling

I have built and applied models for understanding the ecological relations and biogeochemical flows through the North Sea ecosystem. Also for this research I apply trait-based models, looking at traits such as vertical positioning or energy allocation. As an outcome, I have, e.g., estimated the biomass of blue mussels in the North Sea and quantified the effect of Offshore Wind Farm biofouling on the sea’s produtivity.

Model coupling

I led the development of the Earth System coupler MOSSCO, leveraging ESMF technologies. I like to rip legacy models apart and reconstruct them with interoperability and reusability by design. I contribute to building the next-generation modular hurricane forecasting system.

Good scientific modeling practices

As a member of the Open Modeling Foundation (OMF), I am an evangelist of good scientific software practices, and educate and publish about improving underlying assumptions, stating clear purposes, keeping models simple and aquiring tools to further good practices.

Dr. Kimberly G. Rogers studies the coupled human-natural processes shaping coastal environments. She obtained a B.Sc. in Geological Sciences from the University of Texas at Austin and began her graduate studies on Long Island at Stony Brook University’s School of Marine and Atmospheric Sciences. Rogers completed her Ph.D. at Vanderbilt University, where she specialized in nearshore and coastal sediment transport. She was a postdoctoral scholar and research associate at the Institute for Arctic and Alpine Research at the University of Colorado Boulder. In 2014, her foundation in the physical sciences was augmented by training in Environmental Anthropology at Indiana University Bloomington through an NSF Science, Engineering, and Education for Sustainability (SEES) Fellowship.

My initial training was in cadastre and geodesy (B.Eng from the Distrital University, UD, Colombia). After earning my Master’s degree in Geography (UPTC, Colombia) in 2003, I worked for the “José Benito Vives de Andreis” marine and coastal research institute (INVEMAR) and for the International Center for Tropical Agriculture (CIAT). Three years later, in 2006, I left Colombia to come to Canada, where I began a PhD in Geography with a specialization in modelling complex systems at Simon Fraser University (SFU), under the direction of Dr. Suzana Dragicevic (SAMLab). In my dissertation I examined the topic of spatial and temporal modelling of insect epidemics and their complex behaviours. After obtaining my PhD in 2011, I began postdoctoral studies at the University of British Columbia (2011) and the University of Victoria (2011-2013), where I worked on issues concerning the spatial and temporal relationships between changes in indirect indicators of biodiversity and climate change.

http://learnmem.cshlp.org/content/27/1.cover-expansion
(Cover simulation using NetLogo, January 2020)
Enver Miguel Oruro, Grace V.E. Pardo, Aldo B. Lucion, Maria Elisa Calcagnotto and Marco A. P. Idiart. Maturation of pyramidal cells in anterior piriform cortex may be sufficient to explain the end of early olfactory learning in rats. Learn. Mem. 2020. 27: 20-32 © 2020 Oruro et al.; Published by Cold Spring Harbor Laboratory Press

http://learnmem.cshlp.org/content/27/12.cover-expansion
(paper using NetLogo, December 2020)
Enver Miguel Oruro, Grace V.E. Pardo, Aldo B. Lucion, Maria Elisa Calcagnotto and Marco A. P. Idiart. The maturational characteristics of the GABA input in the anterior piriform cortex may also contribute to the rapid learning of the maternal odor during the sensitive period Learn. Mem. 2020. 27: 493-502 © 2020 Oruro et al.; Published by Cold Spring Harbor Laboratory Press

Enver Oruro, BA Psych. PhD(s).
Computational Psychologist
[email protected]
https://br.linkedin.com/in/enveroruro
Neurocomputational and Language Processing Laboratory, Institute of Physics/ UFRGS
Neurophysiology and Neurochemistry of Neuronal Excitability and Synaptic Plasticity Laboratory, Department of Biochemistry/ UFRGS

Meeting Organization

2009 First Meeting on Complex Systems -Neuroscience and Behavior Laboratory, School of Medicine UPCH Lima

2010 Second Meeting on Complex Systems - College of Psychologists of Peru / Colegio de Psicólogos del Perú (CPsP) Lima

2012 3rd Meeting on Complex Systems – Computational Social Psychology, /Neuroscience and Behavior Laboratory, School of Medicine UPCH Lima February 2012 https://www.comses.net/events/185/
http://www.neurocienciaperu.org/home/3ra-reunion-de-sistemas-complejos-psicologia-social-computacional
2012 4th Meeting on Complex Systems – Cognotecnology and Cognitive Science, Neuroscience and Behavior Laboratory, School of Medicine UPCH Lima July 2012 https://www.comses.net/events/212/

2014 5th Meeting on Complex Systems – Complexity Roadmap. The Imperial City of the Incas, Cusco, April. https://www.comses.net/events/312/

2015 Chair of “e-session on Neuroscience and Behavior” UNESCO UniTwin CS-DC’15
2015 Chair of “e-session on Social Psychology” UNESCO UniTwin CS-DC’15
CS-DC’15 (Complex Systems Digital Campus ’15 – World e-Conference) is organizing the e-satellites of CCS’15, the international Conference on Complex Systems. It is devoted to all scientists involved in the transdisciplinary challenges of complex systems, crossing theoretical questions with experimental observations of multi-level dynamics. CCS’15 is organized by the brand new ASU-SFI Center for Biosocial Complex Systems. Arizona State University, (USA) from Sept 28 to Oct 2, 2015, in close collaboration with the Complex Systems Society and the Santa Fe Institute. from http://cs-dc-15.org/

2018 Seminar in “Mother-Infant Attachment and Supercomputing”, NY. USA and Porto Alegre, Brazil, August 09. https://www.comses.net/events/499/

2019 Seminar in Experimental and Computational Studies on Mother-Infant Relationship October 8 and 15, 2019 ICBS, /Determine the neural pathways by which the nervous system of the neonates establish attachment with their mothers is a problem that has motivated hypothesis and experiments at several scale levels, from neurotransmission to ethological level. UFRGS, Porto Alegre, Brazil. https://www.comses.net/events/549/

2020 Seminar in Maternal Infant Relationship Studies: Neuroscience and Artificial Intelligence March 7 and 9
Goals 1. Discuss a Roadmap for mother-Infant relationship research in the framework of the UNESCO Complex System Digital Campus project. https://www.comses.net/events/570/ https://sites.google.com/view/envermiguel/seminar-in-maternal-infant-relationship-studies?read_current=1

https://drive.google.com/file/d/1-FVQXBXy4RLKIQA-RBx3KFLJxyBsnyCW/view?usp=sharing

Master Degree

I discovered at the same time Agent-Based Modeling method and Companion Modelling approach during my master degrees (engeenering and artificial intelligence and decision) internship at CIRAD in 2005 and 2006 where I had the opportunity to participate as a modeller to a ComMod process (Farolfi et al., 2010).

PhD

Then, during my PhD in computer Science applied to Modeling and Simulation, I learned the Theory of Modeling and Simulation and the Discrete EVent System specification formalism and proposed a conceptual, formal and operational framework to evaluate simulation models based on the way models are used instead of their ability to reproduce the target system behavior (Bonté et al., 2012). Applied to the surveillance of Epidemics, this work was rather theoritical but very educative and structuring to formulate my further models and research questions about modeling and simulation.

Post-Doc

From 2011 to 2013, I worked on viability theory applied to forest management at the Compex System Lab of Irstea (now Inrae) and learned about the interest of agregated models for analytical results (Bonté et al, 2012; Mathias et al, 2015).

G-EAU

Since 2013, I’m working for Inrae at the joint The Joint Research Unit “Water Management, Actors, Territories” (UMR G-EAU) where I’m involved in highly engaging interdisciplinary researches such as:
- The Multi-plateforme International Summer School about Agent Based Modelling and Simulation (MISSABMS)
- The development of the CORMAS (COmmon Pool Resources Multi-Agents Systems) agent-based modeling and simulation Platform (Bommel et al., 2019)
- Impacts of the adaptation to global changes using computerised serious games (Bonté et al., 2019; Bonté et al. , 2021)
- The use of experimentation to study social behaviors (Bonté et al. 2019b)
- The impact of information systems in SES trajectories (Paget et al., 2019a)
- Adaptation and transformations of traditional water management and infrastructures systems (Idda et al., 2017)
- Situational multi-agent approaches for collective irrigation (Richard et al., 2019)
- Combining psyhcological and economical experiments to study relations bewteen common pool resources situations, economical behaviours and psychological attitudes.

As of my incorporation into the Department of Computer Architecture and Operating Systems of the UAB as a postgraduate student, it is possible to divide my scientific-technical career into the following stages:

Simulation of Parallel Applications (1992-99): Focused on the design and development of simulators of parallel applications. This research main objective was the definition of abstractions for parallel programs, based on characterizing tasks and their dependences. Two main abstractions were developed, at first a simpler one, which was easier to parametrize, and, next, a more complex an accurate one. Using these characterizations, several simulation tools were programmed and used in the context of national and European projects. As part of my Master’s thesis, I was involved in the design and development of some of these simulation applications.

National projects: 4, European: 2

International conferences: 3, National: 1, Journal papers: 3

Security in Distributed Systems (2007-12): Focused on the design and development of the FPVA (First Principles Vulnerability Assessment) methodology for the evaluation of vulnerabilities in Grid applications. This methodology clearly defined a set of steps for the assessment of Grid applications vulnerabilities, most of these steps could be automatized or at least supported by specific tools. Jointly with other professors of our group and from the University of Wisconsin, I was involved in the original definition and application of this methodology.

International projects: 2

Master Thesis: 1, Ph.D. Thesis: 1

International conferences: 2, National: 1, Journal papers: 2

Parallel Application Modeling (1999-present): This is my main line of research, aimed at defining high-level performance models for parallel applications. Initially, models were defined for MPI applications with a master-worker and pipeline structure, but later this line has been expanded with the definition of models for memory-intensive OpenMP applications, composed (mix of several structures) applications, applications based on mathematical libraries, distributed data-intensive applications and, finally, applications based on the simulation of agents (ABS) with SPMD structure.

As a result of the work on modeling the performance of ABS parallel systems, we have opened a new line for the definition and implementation of a benchmark for assessing the performance of the parallel simulators generated by well-known platforms, such as FLAME, Repast-HPC or D-Mason. In addition, the knowledge we have gained on this topic has opened new ways of collaboration for optimizing real parallel ABS in the health sciences area (tumor growth and infection spread).

National projects: 12, European: 1

International conferences: 17, National: 4, Journal papers: 11

International Presentations: 4

Parallel Applications Tuning Tools (2010-present): Focused on the design and development of tools for automatic tuning and, in some cases, also dynamic tuning of parallel applications. These tools allow the integration of performance models in the form of external components provided by the analyst. For this reason, this research line is tightly coupled with the Parallel Application Modeling one. The two main tools developed totally or partially by our group are Monitoring Analysis and Tuning Environment-MATE (and its highly scalable evolution ELASTIC) and Periscope Tuning Framework-PTF.

National projects: 2, European: 1

International conferences: 11, Journal papers: 2

Tools: MATE, ELASTIC, PTF

International Presentations: 5