I am a Postdoctoral Associate in the Ecology, Evolution and Behavior department at the University of Minnesota. My research involves using agent-based models combined with lab and field research to test a broad range of hypotheses in biology. I am currently developing an agent-based model of animal cell systems to investigate the epigenetic mechanisms that influence cell behavior. For my PhD work, I created a model, B3GET, which simulates the evolution of virtual primates to better understand the relationships between growth and development, life history and reproductive strategies, mating strategies, foraging strategies, and how ecological factors drive these relationships. I have also conducted fieldwork to inform the modeled behavior of these virtual organisms. Here I am pictured with an adult male gelada in Ethiopia!

Master Degree

I discovered at the same time Agent-Based Modeling method and Companion Modelling approach during my master degrees (engeenering and artificial intelligence and decision) internship at CIRAD in 2005 and 2006 where I had the opportunity to participate as a modeller to a ComMod process (Farolfi et al., 2010).

PhD

Then, during my PhD in computer Science applied to Modeling and Simulation, I learned the Theory of Modeling and Simulation and the Discrete EVent System specification formalism and proposed a conceptual, formal and operational framework to evaluate simulation models based on the way models are used instead of their ability to reproduce the target system behavior (Bonté et al., 2012). Applied to the surveillance of Epidemics, this work was rather theoritical but very educative and structuring to formulate my further models and research questions about modeling and simulation.

Post-Doc

From 2011 to 2013, I worked on viability theory applied to forest management at the Compex System Lab of Irstea (now Inrae) and learned about the interest of agregated models for analytical results (Bonté et al, 2012; Mathias et al, 2015).

G-EAU

Since 2013, I’m working for Inrae at the joint The Joint Research Unit “Water Management, Actors, Territories” (UMR G-EAU) where I’m involved in highly engaging interdisciplinary researches such as:
- The Multi-plateforme International Summer School about Agent Based Modelling and Simulation (MISSABMS)
- The development of the CORMAS (COmmon Pool Resources Multi-Agents Systems) agent-based modeling and simulation Platform (Bommel et al., 2019)
- Impacts of the adaptation to global changes using computerised serious games (Bonté et al., 2019; Bonté et al. , 2021)
- The use of experimentation to study social behaviors (Bonté et al. 2019b)
- The impact of information systems in SES trajectories (Paget et al., 2019a)
- Adaptation and transformations of traditional water management and infrastructures systems (Idda et al., 2017)
- Situational multi-agent approaches for collective irrigation (Richard et al., 2019)
- Combining psyhcological and economical experiments to study relations bewteen common pool resources situations, economical behaviours and psychological attitudes.

I am a marine environmental scientist by training (U Oldenburg, 2001) with a PhD in atmospheric physics (U Wuppertal, 2005) and a strong modeling focus throughout my career.

Archaological modeling

I have built models (C, C++) for understanding the regional transitions from hunting-gathering subsistence to agropastoral life styles throughout the world. The fundamental principle of these models is to consider aggregate traits of populations, such as the preference for a subsistence style. I applied these models to the European “Wave of Advance”, to the disintegration of the urban Indus civilisation and to the differential emergence of agropastoralism in the Americas versus Europe, but also globally. An interesting outcome of these models are global and reginoally resolved prehistoric CO2 emissions caused by the land use transitions.

Ecosystem modeling

I have built and applied models for understanding the ecological relations and biogeochemical flows through the North Sea ecosystem. Also for this research I apply trait-based models, looking at traits such as vertical positioning or energy allocation. As an outcome, I have, e.g., estimated the biomass of blue mussels in the North Sea and quantified the effect of Offshore Wind Farm biofouling on the sea’s produtivity.

Model coupling

I led the development of the Earth System coupler MOSSCO, leveraging ESMF technologies. I like to rip legacy models apart and reconstruct them with interoperability and reusability by design. I contribute to building the next-generation modular hurricane forecasting system.

Good scientific modeling practices

As a member of the Open Modeling Foundation (OMF), I am an evangelist of good scientific software practices, and educate and publish about improving underlying assumptions, stating clear purposes, keeping models simple and aquiring tools to further good practices.

As a data scientist, I employ a variety of ecoinformatic tools to understand and improve the sustainability of complex social-ecological systems.  I also apply Science and Technology Studies lenses to my modeling processes in order to see potential ways to make social-ecological system management more just.  I prefer to work collaboratively with communities on modeling: teaching mapping and modeling skills, collaboratively building data representations and models, and analyzing and synthesizing community-held data as appropriate. At the same time, I look for ways to create space for qualitative and other forms of knowledge to reside alongside quantitative analysis, using mixed and integrative methods.

Recent projects include: 1) Studying Californian forest dynamics using Bayesian statistical models and object-based image analysis (datasets included forest inventories and historical aerial photographs); 2) Indigenous mapping and community-based modeling of agro-pastoral systems in rural Zimbabwe (methods included GPS/GIS, agent-based modeling and social network analysis); 3) Supporting Tribal science and environmental management on the Klamath River in California using historical aerial image analysis of land use/land cover change and social networks analysis of water quality management processes; 4) Bayesian statistical modeling of community-collected data on human uses of Marine Protected Areas in California.